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Table 1 Forward and reverse primers, and TaqMan fluorogenic (FAM-TAMRA or FAM-MGBNFQ) probes, used in real-time, quantitative PCR assays to determine the relative ara1 and ara2 mRNA levels in Atlantic salmon.

From: Entry into puberty is reflected in changes in hormone production but not in testicular receptor expression in Atlantic salmon (Salmo salar)

Target

GenBank accession no.

Primera

Sequence (5′➔3′)a

Slopeb

ara1

KJ584693

ara1-Fw

CGCAGAATTGCCCTTAAGCA

−3,54

ara1-Rv

CCACCATGAAGGCGAAAATG

 

ara1-probe

FAM-CACAGACAACAGGGAAAAATAGCCACGATT-TAMRA

 

ara2

KJ584694

ara2-Fw

TGTCGCTCTGGACCGTTAGC

−3,60

ara2-Rv

ATGGTGGTGCAGGCAGAATT

 

ara2-probe

FAM-CAGTGCTGTCAACCAGCTGTGCCC-TAMRA

 
  1. aSequences are shown for the sense (Fw) and antisense (Rv) primers, and the TaqMan probe (probe). Probes have a 6-FAM label at their 5′-ends, and a TAMRA quencher label at their 3′-ends
  2. bSlope for primer/probe combinations obtained in validation experiments using four 10-fold dilutions of testis cDNA