Table 2 Top 20 known genes of the most or less expression over two-fold differences between Day 7E vs. Day 14E – see also additional file 1
Accession No. | Gene name | D14E/D7E | K-means | Classification |
|---|---|---|---|---|
| Â | Day 14E/Day 7E down-regulated genes (<0.5) | Â | Â | Â |
L07872 | Homo sapiens Jk-recombination signal binding protein | 0.19 | 8 | Apoptosis & Cell cycle |
NM_001294 | Homo sapiens CLPTM1 | 0.23 | 4 | Cytokine family |
NM_001021 | Homo sapiens ribosomal protein S17 (RPS17) | 0.25 | 8 | Ribosomal |
M20866 | Sus scrofa cofilin | 0.25 | 1 | Cytoskeleton |
M21683 | Sus scrofa nonhistone protein HMG1 | 0.30 | 8 | DNA binding protein |
AF020508 | Bos taurus PAG-6 | 0.36 | 11 | Cytokine family |
AF020507 | Bos taurus PAG-5 | 0.39 | 11 | Cytokine family |
X91755 | Bos taurus cathepsin L | 0.42 | 8 | Oncogene & Tumor inhibitor |
NM_005722 | Homo sapiens ARP2 actin-related protein 2 homolog (yeast) | 0.43 | 8 | Cytoskeleton |
AF210381 | Bos taurus DDVit1 | 0.44 | 4 | ECM & related |
AF020506 | Bos taurus PAG-4 | 0.46 | 1 | Cytokine family |
U21660 | Bos taurus phosphatidylcholine transfer protein | 0.47 | 4 | Â |
L02897 | Dog nonerythroid beta-spectrin | 0.47 | 9 | Â |
AF166124 | Homo sapiens selenoprotein X | 0.49 | 8 | Â |
| Â | Day 14E/Day 7E up-regulated genes (2<) | Â | Â | Â |
X14926 | Mus musculus calreticulin | 24.00 | 12 | Â |
AB009282 | Homo sapiens cytochrome b5 | 16.48 | 12 | Â |
NM_004494 | Homo sapiens hepatoma-derived growth factor (HDGF) | 13.52 | 12 | Oncogene & Tumor inhibitor |
AF000137 | Bos taurus connective tissue growth factor precursor (CTGF) | 12.18 | 12 | Cytokine family |
NM_000365 | Homo sapiens triosephosphate isomerase 1 (TPI1) | 10.52 | 12 | Â |
X89984 | Homo sapiens BCL7A protein | 10.31 | 12 | Cytoskeleton |
AF217197 | Homo sapiens FBP interacting repressor (FIR) | 9.80 | 12 | Transcriptional regulator |
NM_005720 | Homo sapiens ARPC1B | 9.45 | 3 | Cytoskeleton |
NM_001404 | Homo sapiens EEF1G | 9.43 | 12 | Transcriptional regulator |
AB003094 | Bos taurus ferritin L subunit | 9.38 | 12 | Â |
X56503 | Sus scrofa casein kinase II beta subunit (CKII beta) | 8.55 | 12 | Enzyme |
X13684 | Bos taurus glutathione peroxidase (gpx1) | 8.39 | 3 | Enzyme |
NM_002436 | Homo sapiens membrane protein, palmitoylated 1 (55 kD) | 8.33 | 12 | Membrane protein |
NM_005022 | Homo sapiens profilin 1 (PFN1) | 8.09 | 12 | Cytoskelton |
X01809 | Bos taurus cathepsin 3' terminus | 8.08 | 12 | Oncogene & Tumor inhibitor |
AF207664 | Homo sapiens matrix metalloprotease (ADAMTS1) | 8.03 | 3 | ECM & related |
X56597 | Homo sapiens humFib fibrillarin | 7.97 | 12 | Â |
AF182001 | Bos taurus D4-GDP-dissociation inhibitor (D4-GDI) | 7.82 | 3 | Â |
NM_007317 | Homo sapiens kinesin-like 4 (KNSL4) | 7.66 | 2 | Â |
M21044 | Bos taurus MHC class I BoLA | 7.65 | 2 | Cytokine family |