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Table 5 Genes previously described to be progesterone regulated that are down-regulated in endometrium of subjects with repeated embryo implantation failure

From: Endometrial gene expression reveals compromised progesterone signaling in women refractory to embryo implantation

UniGene ID

Gene symbol

Gene title

Up regulated in window of implantation

Down regulated in endometriosis or mifepristone

Fold change

p value

Hs.386793

GPX3

Glutathione peroxidase 3 (plasma) (GPX3), mRNA.

[25, 27, 29, 32]

 

0.01

0.00013

Hs.458355

C1S

Complement component 1, s subcomponent, transcript variant 1, mRNA.

[28, 29]

 

0.02

0.00043

Hs.647023

CLDN3

Claudin 3

[24]

 

0.07

0.00086

Hs.89603

MUC1

Mucin 1, transmembrane, mRNA.

[25]

[4]

0.11

0.00022

Hs.436657

CLU

Clusterin (complement lysis inhibitor, SP-40,40, sulfated glycoprotein 2, testosterone-repressed prostate message 2, apolipoprotein J), transcript variant 1, mRNA.

[27, 29, 31, 32]

 

0.12

0.00086

Hs.276770

CD52

CD52 molecule

 

[7]

0.14

0.00043

Hs.498173

SMPD1

Sphingomyelin phosphodiesterase 1, acid lysosomal (acid sphingomyelinase), transcript variant 1, mRNA.

[24, 26]

 

0.14

0.00013

Hs.523414

LOC492304

Putative insulin-like growth factor II associated protein, mRNA.

[27]

 

0.15

0.00022

Hs.532325

PAEP

Progestagen-associated endometrial protein

[24, 25, 27, 31, 32]

[39]

0.15

0.00086

Hs.590970

AXL

AXL receptor tyrosine kinase

[24]

 

0.15

0.00022

Hs.163893

PICALM

Phosphatidylinositol binding clathrin assembly protein

 

[4]

0.16

0.00086

Hs.525607

TNFAIP2

Tumor necrosis factor, alpha-induced protein 2, mRNA.

[27–29, 32]

 

0.18

0.00043

Hs.654439

APOE

Apolipoprotein E

[24, 29]

 

0.18

0.00086

Hs.201978

PTGS1

Prostaglandin-endoperoxide synthase 1 (prostaglandin G/H synthase and cyclooxygenase), transcript variant 2, mRNA.

[29]

[7]

0.19

0.00013

Hs.82071

CITED2

Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2, mRNA.

[25]

 

0.19

0.00086

Hs.524518

STAT6

Signal transducer and activator of transcription 6, interleukin-4 induced, mRNA.

[29]

 

0.19

0.00022

Hs.478588

BCL6

B-cell CLL/lymphoma 6 (zinc finger protein 51), transcript variant 1, mRNA.

[25, 27, 29]

 

0.20

0.00086

Hs.1012

C4BPA

Complement component 4 binding protein, alpha

[24, 25, 27, 29, 31, 32]

[39]

0.22

0.00043

Hs.21765

FADS3

Fatty acid desaturase 3, mRNA.

[26]

 

0.23

0.00043

Hs.4055

KLF6

Kruppel-like factor 6

[25]

 

0.23

0.00013

Hs.332708

FBLN5

Fibulin 5, mRNA.

[27, 29]

 

0.23

0.00022

Hs.25292

JUNB

Jun B proto-oncogene, mRNA.

[25, 26]

 

0.25

0.00043

Hs.431048

ABL1

V-abl Abelson murine leukemia viral oncogene homolog 1, transcript variant b, mRNA.

[24]

 

0.27

0.00086

Hs.190783

HAL

Histidine ammonia-lyase

[26, 32]

 

0.27

0.00086

Hs.513984

FLII

Flightless I homolog (Drosophila), mRNA.

[24, 32]

 

0.27

0.00043

Hs.643357

ADAMTS1

ADAM metallopeptidase with thrombospondin type 1 motif, 1

[29]

 

0.29

0.00022

Hs.44227

HPSE

Heparanase

[29]

 

0.29

0.00086

Hs.515536

RRAS

Related RAS viral (r-ras) oncogene homolog, mRNA.

[27]

 

0.29

0.00013

Hs.409578

STK38

Serine/threonine kinase 38

[26]

 

0.29

0.00043

Hs.549171

C1orf56

Chromosome 1 open reading frame 56

 

[7]

0.29

0.00022

Hs.494457

NINJ1

Ninjurin 1, mRNA.

[26]

 

0.29

0.00013

Hs.270291

ACTN4

Actinin, alpha 4 (ACTN4), mRNA.

[29]

 

0.29

0.00086

Hs.381099

LCP1

Lymphocyte cytosolic protein 1 (L-plastin), mRNA.

[28, 29]

 

0.31

0.00043

Hs.185172

GNB2

Guanine nucleotide binding protein (G protein), beta polypeptide 2, mRNA.

[26]

 

0.31

0.00013

Hs.1497

RARG

Retinoic acid receptor, gamma

 

[7]

0.33

0.00043

Hs.474751

MYH9

Myosin, heavy polypeptide 9, non-muscle, mRNA.

[29]

 

0.33

0.00043

Hs.255093

PFKL

Phosphofructokinase, liver, transcript variant 2, mRNA.

[24]

 

0.33

0.00086

Hs.503911

NNMT

Nicotinamide N-methyltransferase

[25, 27]

 

0.33

0.00043

Hs.504877

ARHGDIB

Rho GDP dissociation inhibitor (GDI) beta , mRNA.

[24, 26, 27, 29]

 

0.33

0.00022

Hs.210995

CA12

Carbonic anhydrase XII, transcript variant 2, mRNA.

[27, 32]

 

0.35

0.00043

Hs.520640

ACTB

Actin, beta, mRNA.

 

[7]

0.35

0.00086

Hs.514819

AP2B1

Adaptor-related protein complex 2, beta 1 subunit, mRNA.

[24]

 

0.35

0.00013

Hs.511605

ANXA2

Annexin A2, transcript variant 2, mRNA.

[29]

 

0.35

0.00086

Hs.87752

MSN

Moesin, mRNA.

[29]

 

0.35

0.00022

Hs.654958

ABCF2

ATP-binding cassette, sub-family F (GCN20), member 2

 

[7]

0.35

0.00013

Hs.443577

TNFRSF21

Tumor necrosis factor receptor superfamily, member 21

[29]

[4]

0.35

0.00086

Hs.591868

ZBTB10

Zinc finger and BTB domain containing 10

 

[4]

0.35

0.00043

Hs.25348

VAMP2

Vesicle-associated membrane protein 2 (synaptobrevin 2)

 

[4]

0.38

0.00086

Hs.159161

ARHGDIA

Rho GDP dissociation inhibitor (GDI) alpha, mRNA.

[24]

[7]

0.38

0.00022

Hs.131269

RARRES1

Retinoic acid receptor responder (tazarotene induced) 1

[27]

 

0.38

0.00086

Hs.513915

CLDN7

Claudin 7, mRNA.

[25]

 

0.38

0.00013

Hs.10326

COPE

Coatomer protein complex, subunit epsilon, transcript variant 2, mRNA.

[24]

 

0.38

0.00013

Hs.416024

NRSN2

Neurensin 2

 

[7]

0.38

0.00043

Hs.434248

PLEC

Plectin

[26, 29]

[39]

0.38

0.00086

Hs.584854

AVIL

Advillin

[26, 29]

 

0.41

0.00022

Hs.183109

MAOA

Monoamine oxidase A

[24, 25, 27, 28, 31, 32]

 

0.41

0.00013

Hs.365405

SELO

Selenoprotein O

 

[4]

0.41

0.00013

Hs.645228

KIR3DL1

Killer cell immunoglobulin-like receptor, three domains, long cytoplasmic tail, 1

[29]

 

0.41

0.00086

Hs.528299

HTATIP

HIV-1 Tat interacting protein, 60 kDa, transcript variant 3, mRNA.

[26]

 

0.41

0.00043

Hs.164226

THBS1

Thrombospondin 1, mRNA.

[29]

 

0.41

0.00086

Hs.647078

CDK5

Cyclin-dependent kinase 5

 

[7]

0.41

0.00043

Hs.278573

CD59

CD59 antigen p18-20 (antigen identified by monoclonal antibodies 16.3A5, EJ16, EJ30, EL32 and G344), transcript variant 2, mRNA.

[29]

 

0.41

0.00022

Hs.515162

CALR

Calreticulin

 

[7]

0.41

0.00043

Hs.465744

INSR

Insulin receptor

[26]

 

0.41

0.00013

Hs.274256

ELOVL7

ELOVL family member 7, elongation of long chain fatty acids (yeast)

 

[4]

0.44

0.00086

Hs.450230

IGFBP3

Insulin-like growth factor binding protein 3

[27, 29, 32]

 

0.44

0.00086

Hs.504687

MYL9

Myosin, light polypeptide 9, regulatory

[27]

 

0.44

0.00022

Hs.446641

ARAF

V-raf murine sarcoma 3611 viral oncogene homolog, mRNA.

[25]

 

0.44

0.00086

Hs.2030

THBD

Thrombomodulin

[25, 27, 29]

 

0.44

0.00013

Hs.104672

FILIP1L

Filamin A interacting protein 1-like

[27]

 

0.44

0.00086

Hs.75862

SMAD4

SMAD family member 4

 

[4]

0.44

0.00022

Hs.520757

TBXAS1

Thromboxane A synthase 1 (platelet, cytochrome P450, family 5, subfamily A), transcript variant TXS-II, mRNA.

[29]

 

0.47

0.00013

Hs.283741

EXOSC5

Exosome component 5

 

[7]

0.47

0.00086

Hs.174312

TLR4

Toll-like receptor 4, transcript variant 2, mRNA.

[29]

 

0.47

0.00043

Hs.24601

FBLN1

Fibulin 1

[31]

[7]

0.47

0.00086

Hs.501728

RHOG

Ras homolog gene family, member G (rho G)

 

[7]

0.47

0.00043

Hs.220864

CHD2

Chromodomain helicase DNA binding protein 2

 

[4]

0.47

0.00086

Hs.524809

CLIP1

CAP-GLY domain containing linker protein 1

[29]

 

0.47

0.00043

Hs.92236

MLL4

Myeloid/lymphoid or mixed-lineage leukemia 4

 

[7]

0.47

0.00086

Hs.654688

MKL1

Megakaryoblastic leukemia (translocation) 1

[26]

 

0.47

0.00043

Hs.279837

GSTM2

Glutathione S-transferase mu 2 (muscle)

[26]

 

0.47

0.00086

Hs.645227

TGFB1

Transforming growth factor, beta 1

 

[7]

0.50

0.00086

Hs.149261

RUNX1

Runt-related transcription factor 1

[27]

 

0.50

0.00013

Hs.522818

L1CAM

L1 cell adhesion molecule (hydrocephalus, stenosis of aqueduct of Sylvius 1, MASA (mental retardation, aphasia, shuffling gait and adducted thumbs) syndrome, spastic paraplegia 1)

[26]

 

0.50

0.00043

Hs.840

IDO1

Indoleamine 2,3-dioxygenase 1

[24, 25, 29]

 

0.50

0.00086

Hs.2256

MMP7

Matrix metalloproteinase 7 (matrilysin, uterine)

[27]

 

0.50

0.00043

  1. Data is expressed as fold change for endometrial genes down-regulated ≥2-fold in group A vs. group B that have been shown either up-regulated during the window of implantation or down-regulated in women with endometriosis or treated with mifepristone. Bolded transcripts are decreased also in group A vs. Group C.