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Table 3 Male specific Y chromosome (MSY)-linked coding genes showing differential expression (≥2-fold at P < 0.05) in microarray (MA), RNA-seq (RS) and qRT-PCR (RT) experiments

From: Genomic evidence of Y chromosome microchimerism in the endometrium during endometriosis and in cases of infertility

Comparison between groups

Gene symbol

Fold change

MA

RS

RT

FCON vs ICON

AMELY

−6.5

ND

ND

CD24

−2.0

ND

NS

CDY2A

− 6.1

ND

ND

EIF1AY

−6.2

− 6.1

NS

KDM5D

16.1

ND

ND

NLGN4Y

−5.9

−5.8

NS

TGIF2LY

−8.9

ND

ND

TSPY3

−6.9

ND

ND

VCY

10.3

ND

NS

XKRY2

−6.3

ND

ND

ZFY

−6.6

NS

NS

FOE vs IOE

AMELY

−15.2

ND

ND

BPY2B

−8.0

ND

ND

CDY2A

−9.3

ND

ND

EIF1AY

2.1

2.5

2.4

HSFY2

−21.8

ND

ND

NLGN4Y

4.6

4.3

NS

PRKY

13.9

NS

NS

TBL1Y

2.8

ND

ND

TGIF2LY

−73.9

ND

ND

VCY

−7.5

ND

NS

ZFY

−2.3

NS

NS

FCON vs FOE

AMELY

−4.8

ND

ND

KDM5D

10.0

ND

ND

ICON vs IOE

AMELY

−11.2

ND

ND

BAGE

9.8

NS

3.5

DDX3Y

−11.3

ND

ND

DAZ2

−2.4

ND

ND

EIF1AY

2.1

5.1

2.9

KDM5D

−25.6

ND

ND

NLGN4Y

2.2

3.7

NS

PRKY

11.4

NS

NS

TGIF2LY

−9.3

ND

ND

VCY

−38.3

ND

NS

  1. FCON, control, fertile; ICON, control, infertile; FOE, stage IV, ovarian endometriosis, fertile; IOE, stage IV, ovarian endometriosis, infertile. ND, not detected. NS, not significant. AMELY, amelogenin Y-linked; BPY2B, basic charge Y-linked 2B; BAGE, B melanoma antigen; CD24, small cell lung carcinoma cluster 4 antigen; CDY2A, chromodomain Y-linked 2A; DAZ2, deleted in azoospermia 2; DDX3Y, DEAD-box helicase 3 Y-linked; EIF1AY, eukaryotic translation initiation factor 1A Y-linked; HSFY2, heat shock transcription factor Y-linked 2; KDM5D, lysine demethylase 5D; NLGN4Y, neuroligin 4 Y-linked; PRKY, protein kinase Y-linked; TBL1Y, transducin beta-like 1 Y-linked; TGIF2LY, TGFB induced factor homeobox 2-like Y-linked; TSPY3, testis specific protein Y-linked 3; VCY, variable charge Y-linked; XKRY2, X-Kell blood group precursor-related Y-linked 2; ZFY, zinc finger protein Y-linked