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Table 2 Genes found to be differentially expressed in bovine granulosa cells of OF compared to DF

From: Gene expression profiling of upregulated mRNAs in granulosa cells of bovine ovulatory follicles following stimulation with hCG

Gene Accession
Numbera
Freqb Accession Numberc Identity
(%)d
E
value
Descriptione
ACTG1 EG565281 3 NM_001033618 100% 0 BT Actin gamma 1
ADAMTS1 GR508913 1 NM_001101080 100% 2e−126 BT ADAM metallopeptidase with thrombospondin type 1 motif 1
APP EG565335 1 NM_001076796 100% e−107 BT Amyloid beta precursor protein
ARAF EG565327 4 NM_001014964 100% 0 BT A-Raf proto-oncogene. Serine/threonine kinase
ASB9 EG565323 2 AY438595 99% 4e−179 BT Ankyrin repeat and SOCS box-containing 9
BIRC2 EG565293 1 XM_015466434 100% 2e−67 BT Baculoviral inhibitor of apoptosis repeat containing 2
CAPN2 EG565332 1 NM_001103086 100% 8e−57 BT Calpain 2, (m/II) large subunit
CAV1 EG565338 20 AY823915 100% 0 BT Caveolin 1
CD83 EG565265 1 NM_001046590 99% 0 BT CD83 molecule
CDC42SE2 EG565271 1 NM_001102537 96% 2e−180 BT CDC42 small effector 2
CRISPLD2 EG565333 16 AY369781 100% 0 BT Cysteine-rich secretory protein LCCL domain containing 2
CSRP3 EG565284 1 NM_001024689 99% 3e−165 BT Cysteine and glycine-rich protein 3
CTSK EG565324 1 NM_001034435 100% 5e−168 BT Cathepsin K
DHTKD1 EG565315 1 NM_001205838 100% 3e−170 BT Dehydrogenase E1 and transketolase domain containing 1
EGR1 EG565268 1 AY924307 98% 9e−127 BT Early growth response 1
EIF4E3 EG565311 1 NM_001102306 99% e−179 BT Eukaryotic translation initiation factor 4E family member 3
FKBP5 EG565325 6 NM_001192862 100% 0 BT FK506-binding protein 5
GEM EG565288 2 NM_001083732 100% 0 BT GTP binding protein overexpressed in skeletal muscle
GFPT2 EG565318 5 NM_001076883 99% 4e−168 BT Glutamine-fructose-6-phosphate transaminase 2
GRIA3 EG565320 3 NM_001206059 99% 2e−166 BT Glutamate ionotropic receptor AMPA type subunit 3
KIT EG565345 1 XM_005207937 99% 7e−110 BT KIT proto-oncogene receptor tyrosine kinase
KITLG EG565276 5 NC_007303 99% 0 BT KIT ligand
L3MBTL3 EG565310 2 AY437805 100% 7e−73 BT Histone methyl-lysine binding protein
LRIG1 EG565303 1 XM_002696962 100% 2e−84 BT Leucine-rich repeats and immunoglobulin-like domains 1
MAOA EG565344 4 NM_181014 99% 2e−109 BT Monoamine oxidase A
MMP1 GR508914 3 NM_174112 100% 8e−83 BT Matrix metallopeptidase 1
MORF4L1 EG565343 1 NM_001035448 98% 4e−38 BT Mortality factor 4 like 1
MRO EG565273 4 XM_005224181 100% 1e−95 BT Maestro
NT5E EG565299 1 NM_174129 100% 0 BT 5′-Nucleotidase, ecto
NUDT10 GR508915 2 NM_001035488 100% 2e−138 BT Nudix hydrolase 10
NUDT11 EG565272 3 NM_001101296 100% 0 BT Nudix hydrolase 11
P4HA3 EG565269 2 NM_001001598 100% 1e−96 BT Propyl 4-hydroxylase subunit alpha 3
PAPSS2 EG565283 1 XM_583370 99% 0 BT 3′-Phosphoadenosine 5′-phosphosulfate synthase 2
PIR EG565279 1 NM_001102358 100% 1e−101 BT Pirin (iron-binding nuclear protein)
PLA2G4A EG565305 1 AY363688 100% 4e−164 BT Phospholipase A2 group IVA
PLAT EG565294 8 NM_174146 99% 0 BT Plasminogen activator, tissue type
POSTN EG565275 33 AY445072 100% 0 BT Periostin
PSAP EG565278 2 NM_174161 99% 8e−89 BT Prosaposin
PTGES EG565342 1 AY032727 100% 1e−122 BT Prostaglandin E synthase
PTGS2 EG565287 24 AF031698 100% 0 BT Prostaglandin-endoperoxide synthase 2
PTX3 EG565317 2 NM_001076259 98% 3e−61 BT Pentraxin
RBP1 EG565267 1 NM_001025343 99% 5e−101 BT Retinol binding protein 1
RGS2 EG565346 4 NM_001075596 100% 7e−130 BT Regulator of G-protein signaling 2
RND3 EG565300 1 NM_001099104 100% 1e−127 BT Rho family GTPase 3
SAT1 EG565349 26 NM_001034333 99% 0 BT Spermidine/spermine N1-acetyltransferase 1
SDC4 EG565289 3 XM_584869 99% 1e−136 BT Syndecan 4
SEH1L EG565340 1 NM_001103089 99% 1e−158 BT SEH1-like nucleoporin
SLC25A17 EG565266 1 NM_001045948 99% 0 BT Solute carrier family 25 member 17
SOX4 EG565285 1 NC_007324 99% 8e−173 BT SRY-box 4
SULT1A1 EG565308 1 NM_177521 99% 2e−99 BT Sulfotransferase family 1A member 1
SULT1E1 GR508916 2 NM_177488 99% 4e−60 BT Sulfotransferase family 1E member 1
TIMP1 GR508917 3 NM_174471 100% 2e−90 BT TIMP metallopeptidase inhibitor 1
TIMP2 EG565302 1 NM_174472 99% 5e−163 BT TIMP metallopeptidase inhibitor 2
TMEM176B EG565301 1 NM_001099145 99% 3e−165 BT Transmembrane protein 176B
TMSB4X EG565291 3 NM_001113231 99% 5e−173 BT Thymosin beta 4, X-linked
TMSB10 EG565264 1 NM_174623 100% 2e−131 BT Thymosin beta 10
TNC EG565326 2 NM_001078026 99% 0 BT Tenascin C
TNFAIP6 EG565319 5 NM_001007813 99% 0 BT Tumor necrosis factor alpha-induced protein 6
USP53 EG565304 1 XM_015463685 100% 8e−78 BT Ubiquitin specific peptidase 53
VNN2 EG565337 2 NM_001163920 100% 0 BT Vanin 2
EST EG565334 1 AC_000158 100% 3e−74 BT transcribed locus, chromosome 1
EST EG565313 8 AC_000159 99% 3e−143 BT transcribed locus, chromosome 2 [3’UTR of TNFAIP6]
EST EG565321 4 AC_000159 100% 0 BT transcribed locus, chromosome 2 [intron 1 of TNFAIP6]
EST EG565339 2 AC_000159 99% 0 BT transcribed locus, chromosome 2 [intron 1 of TNFAIP6]
EST EG565316 1 AC_000159 99% 0 BT transcribed locus, chromosome 2 [intron 1 of TNFAIP6]
EST EG565341 2 AC_000159 99% 4e−70 BT transcribed locus, chromosome 2 [3’UTR of TNFAIP6]
EST EG565336 1 AC_000161 99% 0 BT transcribed locus, chromosome 4 [3’UTR of Ubiquitin-conjugated enzyme E2H; UBE2H]
EST EG565296 1 AC_000163 100% 0 BT transcribed locus, chromosome 6
EST EG565307 1 AC_000167 98% 4e−106 BT transcribed locus, chromosome 10 [intron 2 of Nidogen 2; NID2]
EST EG565328 1 AC_000169 99% 0 BT transcribed locus, chromosome 12 [intron 1 of Glypican-6; GPC6]
EST EG565274 1 AC_000169 99% 3e−133 BT transcribed locus, chromosome 12
EST EG565270 1 AC_000172 99% 8e−175 BT transcribed locus, chromosome 15 [3’UTR of Rho GTPase activating protein 20; ARHGAP20]
EST EG565314 1 AC_000179 100% 6e−156 BT transcribed locus, chromosome 22 [intron 28 of ADAM metallopeptidase with thrombospondin type 1 motif 9; ADAMTS9]
EST EG565295 1 AC_000180 100% 0 BT transcribed locus, chromosome 23 [intron of runt related transcription factor 2; RUNX2]
EST EG565309 1 AC_000185 99% 0 BT transcribed locus, chromosome 28 [3’UTR of Sterile alpha motif domain containing 8; SAMD8]
  1. aGenBank accession numbers of differentially expressed bovine SSH cDNA clones
  2. b Freq Frequency of cDNA clone identified from macroarray analyses of OF-DF subtracted library
  3. cAccession number of the best match found following nucleotide sequence comparison via BLAST search in GenBank
  4. dIdentity (%) represents homology estimates of bovine SSH cDNA fragments with nucleotide sequences in GenBank via BLAST search
  5. e BT Bos taurus, EST expressed sequence tag, UTR untranslated region