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Table 4 The over-represented classification of pathways for mouse identified genes

From: A comparative genome analysis of gene expression reveals different regulatory mechanisms between mouse and human embryo pre-implantation development

 

pathways

p value

1 v 2

(10)

mmu03010:Ribosome

1.25E-40

 

mmu04120:Ubiquitin mediated proteolysis

4.56E-08

 

mmu00240:Pyrimidine metabolism

6.90E-06

 

mmu00230:Purine metabolism

8.55E-05

 

mmu04110:Cell cycle

1.25E-04

 

mmu03050:Proteasome

2.07E-04

 

mmu03020:RNA polymerase

3.18E-03

 

mmu04115:p53 signaling pathway

3.71E-03

 

mmu00190:Oxidative phosphorylation

3.87E-03

 

mmu03030:DNA polymerase

7.14E-03

2 v 4

(7)

mmu03010:Ribosome

2.02E-39

 

mmu03050:Proteasome

3.67E-09

 

mmu04110:Cell cycle

6.60E-04

 

mmu00040:Pentose and glucuronate interconversions

1.93E-03

 

mmu00190:Oxidative phosphorylation

3.33E-03

 

mmu00230:Purine metabolism

4.03E-03

 

mmu00500:Starch and sucrose metabolism

9.65E-03

4 v 8

(5)

mmu03010:Ribosome

2.50E-08

 

mmu03050:Proteasome

4.84E-07

 

mmu00190:Oxidative phosphorylation

2.41E-05

 

mmu04120:Ubiquitin mediated proteolysis

2.63E-03

 

mmu00020:Citrate cycle (TCA cycle)

3.94E-03

8 v M

(10)

mmu03010:Ribosome

1.01E-25

 

mmu03050:Proteasome

2.73E-13

 

mmu00240:Pyrimidine metabolism

2.26E-10

 

mmu03020:RNA polymerase

1.23E-08

 

mmu04110:Cell cycle

1.97E-07

 

mmu00230:Purine metabolism

1.36E-05

 

mmu00500:Starch and sucrose metabolism

4.42E-04

 

mmu04120:Ubiquitin mediated proteolysis

6.82E-04

 

mmu00040:Pentose and glucuronate interconversions

8.00E-04

 

mmu00190:Oxidative phosphorylation

4.44E-03

M v B

(9)

mmu03010:Ribosome

4.82E-19

 

mmu00190:Oxidative phosphorylation

2.53E-16

 

mmu03050:Proteasome

1.17E-09

 

mmu00280:Valine, leucine and isoleucine degradation

6.28E-06

 

mmu00020:Citrate cycle (TCA cycle)

1.21E-05

 

mmu04110:Cell cycle

5.17E-04

 

mmu00100:Biosynthesis of steroids

3.50E-03

 

mmu00071:Fatty acid metabolism

3.50E-03

 

mmu00281:Geraniol degradation

4.47E-03

  1. Classification of related pathways was done with DAVID using the genes identified over-represented between each adjacent stage for mouse. P value less than 0.01 was identified as significant. The number in the bracket represents the count of significant pathways.