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Table 2 Summary of each data set used in the re-analysis and the number of differentially expressed pathways.

From: A cross-study gene set enrichment analysis identifies critical pathways in endometriosis

Studies Number of patients Number of controls Number of genes after preprocessing Number of pathways have genes ≥ 10 Up-regulated pathways Down-regulated pathways
Ovarian Data Sets
Eyster 6 6 3105 171 24 31
Hever 10 10 1930 139 56 59
Roth 18 23 2575 154 36 44
Peritoneal Data Sets
Eyster 5 5 3084 171 57 11
Hull 9 9 1255 113 29 7
Uterine cycle Data Sets
Burney_Pro 6 5 1900 138 4 3
Burney_ES 6 3 1471 122 12 21
Burney_MS 9 8 952 93 0 22
Human endometrial endothelial cells Data Set
Sha 5 5 2324 153 44 1
  1. Pro, Proliferative; ES, early secretory; MS, midsecretory Proliferative
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