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Table 5 The highest scoring networks after NASP siRNA treatment (upregulated genes)

From: Analysis of gene expression profiles in HeLa cells in response to overexpression or siRNA-mediated depletion of NASP

 

Focus genes

Interacting genes

Score

Top functions

1

ARL5A, E2F8, GSR, HMGB2, NAP1L5, OGG1, PSIP1, RBM17, RDM1, TMEFF2, TMSL8, UBE2S

APOBEC1, ERBB4, Erbb4 dimer, ERBB4 ligand, ESR2, HCFC1, HINT1 (includes EG:3094), IGH@, KAT5, KPNA2, MAD2L1BP, MAGEH1, NRG3, NRG4, POLE2, RAG1, RCHY1, TBXAS1, TP53, UBE2E3, UBE2V1, WRN (includes EG:7486), WWOX

25

DNA replication, recombination, and repair, cellular development, connective tissue disorders

2

CALB1, CGA, F2RL1, FST, FSTL1, GNG2, SAA1, SYTL5, TNFRSF11B, ZBED2

AKR1C14, ARHGAP22, ARHGEF5, ATP9A, C5ORF23, CENPI, ERK, FJX1, FSH, GK7P, hCG, IL2, LOC81691, LOC652955, MARCH3, NFkB, MRPS6, PI4K2A, RAB27A, REGL, STEAP1, Tgf beta, TP53I11, ZFP386, ZNF808

20

reproductive system disease, respiratory disease, immune response

3

TES, CRYAB, HAPLN1, KIF5C, MFAP5, PDGFRB, PI4K2B, PNMA2, RASSF8, CCDC5

AASS, Abl1/2, Cadherin (E, N, P, VE), CAPRIN1, CDKN2A, CNN2, CTNNB1, DLL3, FRMD6, GLRX2, hydrogen peroxide, KIFC1, KLC3, KRT1, LSR, MLXIP, NOTCH1, PMEPA1, PXN, SRC, SRFBP1, TAX1BP3, TGFB1, TOB2, YWHAG

20

cancer, cell death, cell cycle