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Table 3 Endometriosis-specific genes

From: Serial analysis of gene expression reveals differential expression between endometriosis and normal endometrium. Possible roles for AXL and SHC1 in the pathogenesis of endometriosis

Tag_Sequence Neg. Tags in endom % in endo Symbol Gene name
GAGCCAGGCT 27 1249 96.6 MMP3 Matrix metallopeptidase 3
TGTCATCACA 22 320 76.3 LOXL2 Lysyl oxidase-like 2
TGCAGTCACT 26 317 88.6 MMP1 Matrix metallopeptidase 1
TGCAATAGGT 26 265 90.3 MMP10 Matrix metallopeptidase 10
GCCAGGTGGC 22 244 81.8 MMP2 Matrix metallopeptidase 2
GTATGGGCCC 24 183 88.7 CHI3L1 Chitinase 3-like 1
CCGGGGGAGC 27 158 87.5 COL1A1 Collagen, type I, alpha 1
CAGGAGACCC 28 144 98.1 MMP11 Matrix metallopeptidase 11
CGGGGCGGGG 28 67 83.1 KISS1 KiSS-1 metastasis-suppressor
CCCGCCAGTG 27 59 85.6 ITGA11 Integrin, alpha 11
CTAAGTAGAG 23 59 56.7 undefined Undefined
GTGCTCAGTG 28 49 78.2 PXDN Peroxidasin homolog (Drosophila)
GTTTTATGCG 27 48 86.8 DCBLD1 Discoidin, CUB, LCCL domain containing 1
ACAGAGGGGC 28 47 96.2 ABBA-1 Actin-bundling with BAIAP2 homology
CAGTCAATAT 25 43 74.5 FLJ11041 FLJ11041
GTACCGGGGA 27 36 80.5 MMP14 Matrix metallopeptidase 14
GCTAGACGCG 28 29 86.4 FOXL2 Forkhead box L2
CTGTGGTTAC 26 24 77.7 SLC39A13 Solute carrier family 39, member 13
CACACAAACA 27 23 75.0 TWF1 Twinfilin, actin-binding protein, homolog 1
CAGGCCAACC 28 20 91.6 RSU1 Ras suppressor protein 1
  1. "Neg." indicates the number of libraries without detectable expression of the corresponding tags (out of 29 total libraries). "Tag in endom" and "% in endo" indicate the number of tags in endometriosis (per 200,000 total tags), and the percentage of these tags found in endometriosis compared to all the tissues, respectively.