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Table 2 Genes differentially expressed in endometriosis

From: Serial analysis of gene expression reveals differential expression between endometriosis and normal endometrium. Possible roles for AXL and SHC1 in the pathogenesis of endometriosis

Tag_Sequence

symbol

gene name

endom1

endom2

FbEM-1

normen2

Fold

Elevated

       

CCAGTGGCCC

RPS9

Ribosomal protein S9

64

77

154

0

590

CGAGGGGCCA

ACTN4

Actinin, alpha 4

108

50

98

0

512

CTTGGGTTTT

IGF2

Insulin-like growth factor 2 (somatomedin A)

28

193

16

0

474

GTATGGGCCC

CHI3L1

Chitinase 3-like 1 (cartilage glycoprotein-39)

22

160

10

0

384

GCTGAACGCG

CEBPB

CCAAT/enhancer binding protein (C/EBP)

29

100

15

0

288

CGCAGTGTCC

ATP6V0C

ATPase, H+ transporting, lysosomal 16kDa

53

41

31

0

250

TGAAGTTATA

ITGB1

Integrin, beta 1 (fibronectin receptor)

39

37

48

0

248

AGCTACCGGG

EFEMP2

EGF-containing fibulin-like ECM protein 2

55

11

54

0

240

CGGCTGGTGA

PSMB1

Proteasome (prosome, macropain)

32

32

52

0

232

GTGCCCTGTT

NCKAP1

NCK-associated protein 1

42

46

20

0

216

TTGCCCCCGT

AXL

AXL receptor tyrosine kinase

42

51

14

0

214

GCAGTCGCTT

DYNLRB1

Dynein, light chain

40

37

28

0

210

CAGCTGGGGC

PTBP1

Polypyrimidine tract binding protein 1

27

26

52

0

210

GCCACAGTAC

DKFZP586H2123

Regeneration associated muscle protease

42

42

16

0

200

GCCCCGAGCC

REEP5

Receptor accessory protein 5

18

34

43

0

190

ACCCCCCCGC

JUND

Jun D proto-oncogene

35

21

38

0

188

GAAACAAGAT

PGK1

Phosphoglycerate kinase 1

19

28

44

0

182

GAGGGGAAAC

SHC1

SHC (Src homology 2 domain containing)

40

32

15

0

174

GCCAACAACG

NNMT

Nicotinamide N-methyltransferase

28

15

42

0

170

TTGCCCAGCA

CEECAM1

Cerebral endoth. cell adhesion molecule 1

33

32

17

0

164

Decreased

       

GGGCGGAGCT

SMARCC2

Myosin, light chain 6

0

0

0

68

136

TAATTTTGAA

SNHG5

Small nucleolar RNA host gene 5

0

0

0

50

100

TCCCTATGCT

Hs.689482

CDNA FLJ45874

0

0

0

40

80.0

AAGTGTGACG

ACTG1

actin, gamma 1

0

0

0

36

72.0

AAATTTTAAA

HP1BP3

Heterochromatin protein 1, binding prot 3

0

0

0

31

62.0

TGGTGTTTGG

PPIE

Peptidylprolyl isomerase E

0

0

0

27

54.0

GGGGATCGGT

MRLC2

Myosin regulatory light chain MRLC2

0

0

0

22

44.0

TGGTGTGTGC

Hs.684687

cDNA clone ZD94H12

0

0

0

22

44.0

TCCCTATAAA

no match

Undefined

0

0

0

18

36.0

AGGACAGCAA

MYL6

Myosin, light chain 6

0

1

0

40

27.0

TCCCTAGCCC

no match

Undefined

0

0

1

40

27.0

GCTTATAAAA

HINT1

Histidine triad nucleotide binding protein 1

0

0

0

13

26.0

TAAACTGTTT

RPS14

Ribosomal protein S14

0

0

0

13

26.0

TATGTGTTTT

PAPSS2

3'-phosphoadenos 5'-phosphosulf synth 2

0

0

0

13

26.0

TCCCTTTTAA

B3GNT5

UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 5

0

0

0

13

26.0

TTGAAAATTA

ANXA2

Annexin A2

0

0

0

13

26.0

TTGGAACAAT

no match

Undefined

0

0

0

13

26.0

TAGACCCCTT

GAPDH

Glyceraldehyde-3-phosph dehydrogenase

1

0

0

36

24.0

AAAGGAGAGA

NUCB2

Nucleobindin 2

0

0

0

9

18.0

AAGCCTGTAG

CAMLG

Calcium modulating ligand

0

0

0

9

18.0

  1. The numbers shown represent the number of tags detected in the indicated libraries per 200,000 total tags. "Fold" indicates the ratio of tags detected in endometriosis vs normen2 (for elevated tags) or normen2 vs endometriosis (for decreased tags). A count of zero (0) tag indicates absence of detection (out of 200,000 tags), not necessarily complete absence of expression in the corresponding tissue.