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Table 4 Localisation on pig chromosomes. This table gives the localisation obtained using SCHP and/or ImpRH panel hybrid. The result of SCHP consists in the chromosomal region with statistical scores: error risk and probability. For IMpRH the results were obtained by 2-point analysis. We indicate the number of hybrid clones used (90 or 118 Hybrids), the retention as a % frequency (% ret), the bearing chromosome, the closest marker, the location in Ray, and the load score value. We have indicated the chromosomal localisation in humans when known; the expected localisation in pigs derives from comparative mapping between humans and pigs.

From: Identification of differential gene expression in in vitro FSH treated pig granulosa cells using suppression subtractive hybridization

Clone

Putative identification

Somatic localisation

IMpRH panel used

IMpRH localisation using two point analysis

Human localisation

pig expected localisation

  

Location

% Error risk

Prob.

 

% ret

Chr

Name of the most linked marker

Location

LOD

  

H1-2

AKR1C3

   

90

34

14

EST-AR023C05

4.74

4.81

10p 15 p 14

10

H1-61

col4A5

X p 24

0.10

0.77

90

50

X

SW1426

7.1

14.32

X q22

X

H1-129

SCAP

   

90

25

13

EST-AR062F01

11.44

19.28

3 p 21.31

13

H1-140

FDPS

4 p14-p15

0.10

1.00

90

24

4

IMpRH01700

26.17

15.94

1 q 22

4

H1-180

EST

9 p21-p24

5

0.63

118

35

9

SW911

3.83

10.89

  

H1-246

EST

9 p21-p24

5

0.63

118

40

9

SW911

3.83

14.49

  

H1-276

EST

10 p1-p16

0.10

0.80

118

29

2

PTH3

10.97

5.05

  

H2-44

THBS1

1 p24-p25

1

0.81

118

29

1

348A10F

27.08

5.95

15 q 15

1

H2-92

EST

14?

0.50

1.00

90

31

14

RhC21D6F

19.69

15.71

  

H2-95

EST

4 p14-p15

1

0.76

118

35

4

S0107

18.07

12.08

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