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Table 2 Identification of cDNA clones. The table gives the identification of the cDNA clones using blast analysis against EMBL/NCBI database. The clones were ranked by HUGO symbol (Human Genome Organisation). H1-clones correspond to forward hybridization (FSH-induced genes) and H2-clones to reverse hybridization (FSH-repressed genes).

From: Identification of differential gene expression in in vitro FSH treated pig granulosa cells using suppression subtractive hybridization

Clone

Matching Sequences

clone

EMBL accession number

insert size (bp)

identification

species

Similarity

accession number

HUGO symbol

     

%

bp

  

H2-146

AJ704910

255

actin, alpha 2, smooth muscle, aorta

HS

96

211

MN_001613

ACTA2

H2-96

AJ704907

111

actin, gamma 1

HS

89

119

NM_001614

ACTG1

H1-2

AJ704867

186

cytosolic dihydrodiol dehydrogenase 3

BT

90

115

D49542

AKR1C3

H2-222

AJ704918

643

annexin A5

HS

93

495

CR541842

ANXA5

H1-378

AJ704899

76

ADP-ribosylation factor 1

HS

91

74

AF493881

ARF1

H1-98

AJ704876

166

mitochondrial ATPase 6

SS

98

165

AF250315

ATP6

H1-138

AJ704880

354

calpain I light subunit

SS

99

353

M11778

CAPNS1

H1-357

AJ704896

107

Cctg for chaperonin

HS

96

104

X74801

CCT3

H1-124

AJ704878

177

Pig complement cytolysis inhibitor

SS

99

171

M84639

clu

H1-61

AJ704870

245

alpha collagene human type IV(alport syndrome)

SS

82

162

M31115

col4A5

H2-108

AJ704909

410

cytochrome c oxidase II

SS

99

410

U18827

COXII

H1-253

AJ704887

99

chondroitin sulfate proteoglycan 6

HS

89

88

BC047324

CSPG6

H1-280

AJ704890

251

cytochrome P-450 (SCC)

SS

99

249

X13768

CYP11A1

H1-365

AJ704898

110

7-dehydrocholesterol reductase (DHCR7)

HS

95

111

AF062481

DHCR7

H1-140

AJ704881

143

farnesyl diphosphate synthase

BT

89

75

AF461050

FDPS

H1-185

AJ783757

366

glutathione peroxidase 3 (plasma) (GPX3)

HS

87

354

NM_002084

GPX3

H2-200

AJ704914

179

glycogenin

HS

83

179

NM_004130

GYG

H2-105

AJ704908

228

Homo sapiens heterochromatin protein 1, binding protein 3

HS

92

219

BC045660

HP1BP3

H1-1

AJ704866

256

3 β hydroxysteroidogenase

SS

99

256

AF232699

HSD3B1

H2-265

AJ704919

299

inositol polyphosphate-1-phosphatase

HS

89

229

NM_002194

INPP1

H2-175

AJ704912

187

matrin 3

HS

88

186

NM_018834

MATR3

H1-100

AJ704877

237

NAC alpha

HS

92

237

AY034001

NACA

H1-242

AJ704885

481

complete mitochondrial DNA

SS

100

450

AJ002189

NADH1

H2-201

AJ785755

170

Sus scrofa breed Landrace mitochondrion

SS

100

170

AF304202

NADH5

H1-33

AJ704869

141

peroxiredoxin 2

BT

86

117

AF305562

PDX2

H1-266

AJ704888

135

non-selenium glutathione phospholipid hydroperoxide peroxidase (phgpx gene)

SS

100

135

AJ243849

phgpx

H2-29

AJ704900

123

proteasome (prosome, macropain) 26S subunit, ATPase

HS

86

123

NM_002806

PSMC6

H1-358

AJ704897

87

cDNA DKFZp686F06244

HS

97

87

HSM806676

Q8NEW0

H1-73

AJ704872

120

ribosomal protein S15A

HS

93

130

BC001697

RPS15A

H1-129

AJ704879

467

Sterol regulatory element binding protein cleavage-activating protein (SCAP)

SS

88

486

AY705447

SCAP

H1-90

AJ704873

199

high density lipoprotein receptor SR-BI mRNA

SS

99

199

AF467889

SCARB1

H1-96

AJ704875

404

splicing factor 3a, subunit 3

HS

93

401

NM_006802

SF3A3

H1-62

AJ704871

90

solute carrier family 25

HS

85

98

BC008737

SLC25A6

H2-44

AJ704902

529

thrombospondin 1

BT

90

527

AB005287

THBS1

H1-94

AJ704874

114

tenascin

HS

91

114

D49542.1

TNC

H2-72

AJ704904

133

ubiquitin associated protein 2 (UBAP2), transcript variant 1

HS

91

106

NM_018449.2

UBAP2

H1-202

AJ704883

178

ubiquitin-conjugating enzyme E2E 2

HS

98

178

BC022332

UBE2E2

H1-305

AJ704893

178

angiogenic factor VG5Q,

HS

85

169

BC032844

VG5Q

H2-37

AJ704901

451

vimentin

HS

92

438

NM_003380

VIM

H2-170

AJ704911

191

breed Landrace mitochondrion

SS

100

190

AF304202

unknown

H2-202

AJ704915

120

domestica mitochondrial D-loop,

SS

100

120

AF276937

unknown

H1-180

AJ704882

178

885998 MARC 4PIG

SS

99

178

CF792994

unknown

H1-246

AJ704886

284

jns82_C06.f jns 5'

SS

99

284

CB481752

unknown

H1-276

AJ704889

247

MI-P-CP0-nvm-c-03-0-UI.s2 MI-P-CP0

SS

99

236

BQ603741

unknown

H1-294

AJ704891

131

855499 MARC 4PIG 5'

SS

98

118

CF787582

unknown

H1-345

AJ704895

90

820907 MARC 3PIG 3'

SS

10

89

CF359642

unknown

H2-92

AJ704905

497

jns96_H04.f jns

SS

99

492

CB482726

unknown

H2-199

AJ704913

236

903820 MARC 4PIG 3'

SS

99

236

CK450726

unknown

H1-338

AJ704894

97

, Similar to RIKEN cDNA 2410141M05 gene

HS

91

92

BC008630

unknown

H2-216

AJ704917

107

RIKEN full-length enriched library, product: ribosomal protein S17

MM

94

93

AK007992

unknown

H2-288

AJ704920

162

CT02029A1F04 Equine Articular Cartilage

EC

87

114

CX601260

unknown

H1-14

AJ704868

221

endogenous retrovirus PERV-MSL

SS

97

221

AF038600

 

H1-302

AJ704892

108

None

SS

    

H2-95

AJ704906

137

None

SS

    

H2-206

AJ704916

658

None

SS

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