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Table 2 The longest palindrome repeats* in porcine and bovine ZAR1 coding sequences.

From: Zygote arrest 1 gene in pig, cattle and human: evidence of different transcript variants in male and female germ cells

Palindrome repeats length (nt)

Starting positions of repeats relative to coding ZAR1 region

 

Calculated e-value of repeat**

Sus scrofa

   

15

135

475

1.60e-02

12

77

102

8.18e-01

12

79

202

8.18e-01

12

268

584

8.18e-01

10

269

605

3.63e-01

12

539

789

8.18e-01

10

266

463

3.63e-01

Bos Taurus

18

203

423

7.52e-03

15

41

451

3.30e-01

15

75

212

3.30e-01

13

206

631

2.18e-01

11

137

751

8.95e-02

10

117

560

3.58e-01

10

137

277

3.58e-01

10

267

636

3.58e-01

  1. * Hamming/edit distance of repeats, computed by REPuter software, was ≤ 1.
  2. **Calculated e-value of repeats – number of repeats of the same length or longer and with the same number of errors or fewer that one could expect to find in a random DNA of the same length.