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Table 5 Top 20 known genes of the most or less expression over two-fold differences between Day 28EEM vs. Day 28F.

From: cDNA microarray analysis of bovine embryo gene expression profiles during the pre-implantation period

Accession No.

Gene name

D28F/D28EEM

K-means

Classification

 

Day 28F/Day 28EEM down-regulated genes (<0.5)

   

M73961

Ovis aries PAG-1

0.14

6

Cytokine family

X89984

Homo sapiens BCL7A protein

0.14

12

Cytoskeleton

X15975

Bos taurus PRP-V

0.15

11

Cytokine family

AF079545

Ovis aries placental lactogen precursor (PL)

0.16

8

Cytokine family

AF020509

Bos taurus PAG-7

0.19

11

Cytokine family

J02840

Bos taurus placental lactogen (bPL-Ala)

0.20

5

Cytokine family

X59504

Bos taurus PRP-VI

0.20

11

Cytokine family

S72871

Homo sapiens GATA-2 transcription factor

0.20

8

Transcriptional regulator

AF192336

Bos taurus PAG-19

0.22

11

Cytokine family

AF020508

Bos taurus PAG-6

0.23

11

Cytokine family

J02944

Bos taurus PRP-I

0.24

11

Cytokine family

L06151

Bos taurus PAG-2

0.25

11

Cytokine family

AF020512

Bos taurus PAG-10

0.27

5

Cytokine family

AF020514

Bos taurus PAG-12

0.28

11

Cytokine family

AF192334

Bos taurus PAG-17

0.30

11

Cytokine family

AL133034

Homo sapiens clone DKFZp727K171

0.31

11

 

Z11742

Bos taurus annexin XI

0.31

5

Apoptosis & Cell cycle

U89321

Homo sapiens nucleophosmin phosphoprotein (NPM)

0.32

5

 

X17614

Bos taurus 3 beta hydroxy-5-ene steroid dehydrogenase/delta 5-delta4 isomerase

0.32

5

Enzyme

AF192333

Bos taurus PAG-16

0.32

11

Cytokine family

 

Day 28F/Day 28EEM up-regulated genes (2<)

   

L34261

Bos taurus palmitoyl-protein thioesterase

4.32

6

Enzyme

AF000137

Bos taurus connective tissue growth factor precursor (CTGF)

2.85

12

Cytokine family

NM_004458

Homo sapiens FACL4 transcript variant 1

2.84

7

Enzyme

NM_006491

Homo sapiens NOVA1 transcript variant 3

2.82

1

Oncogene & Tumor inhibitor

NM_006838

Homo sapiens methionine methionyl aminopeptidase 2

2.72

4

Enzyme

AB028449

Homo sapiens helicase-MOI

2.65

9

DNA binding protein

AL080102

Homo sapiens clone DKFZp564N1916

2.64

9

 

AF057300

Homo sapiens truncated RAD50 protein

2.63

3

 

AB043994

Bos taurus MMP-2

2.56

7

ECM & related

NM_006719

Homo sapiens transcript variant ABLIM-m

2.53

1

Cytoskeleton

AF195417

Homo sapiens DEAD-box protein abstrakt (ABS)

2.51

2

 

Z25531

Bos taurus repeat region DNA

2.41

3

 

AF113682

Homo sapiens clone FLB3436 PRO0868

2.40

4

 

S76474

Homo sapiens trkB

2.39

1

Cytokine family

Y16533

Ovis aries IGF-II

2.39

7

Cytokine family

M86739

Bos taurus neuropeptide Y receptor

2.38

7

Cytokine family

AF043937

Homo sapiens DHAPAT

2.37

9

Enzyme

AF144763

Bos taurus TIMP-1 protein

2.36

3

ECM & related

NM_005563

Homo sapiens stathmin 1/oncoprotein 18 (STMN1)

2.36

4

Oncogene & Tumor inhibitor

AF198487

Homo sapiens transcription factor LBP-1b

2.34

4

Transcriptional regulator

  1. All data of individual gene changes are available in Suppl. Table 4 of the Additional file.