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Table 4 Top 20 known genes of the most or less expression over two-fold differences between Day 21E vs. Day 28EEM.

From: cDNA microarray analysis of bovine embryo gene expression profiles during the pre-implantation period

Accession No.

Gene name

D28EEM/D21E

K-means

Classification

 

Day 28EEM/Day 21E down-regulated genes (<0.5)

   

AF196320

Bos taurus Interferon-tau1C

0.07

2

Cytokine family

AF033096

Avena sativa nonphototropic hypocotyl 1 (NPH1-1)

0.22

12

 

L10240

Homo sapiens EMMPRIN

0.24

7

ECM & related

U21660

Bos taurus phosphatidylcholine transfer protein

0.27

4

 

X15112

Bos taurus cytochrome c oxidase subunit VIb (AED)

0.28

4

 

L34261

Bos taurus palmitoyl-protein thioesterase

0.29

6

Enzyme

M26576

Homo sapiens alpha-1 collagen type IV

0.29

6

ECM & related

NM_001747

Homo sapiens capping protein, gelsolin-like (CAPG)

0.32

2

Cytoskeleton

U46064

Sus scrofa aldehyde reductase (ALR1)

0.33

3

Enzyme

AF020513

Bos taurus PAG-11

0.33

12

Cytokine family

M11120

Rat 28S rRNA

0.33

2

 

NM_004718

Homo sapiens COX7A2L

0.34

8

Enzyme

AF144763

Bos taurus TIMP-1

0.35

3

ECM & related

AF034607

Homo sapiens chloride channel ABP

0.36

8

Membrane protein

NM_005556

Homo sapiens keratin 7 (KRT7)

0.36

2

Cytoskeleton

AJ243656

Methanobacterium thermoautotrophicum ehbA-Q

0.37

2

 

M83104

Bos taurus cytochrome b5 reductase

0.37

2

Enzyme

X59693

Bos taurus ubiquinol-cytrochrome-c reductase (subunit II)

0.38

6

Enzyme

D84557

Homo sapiens HsMcm6

0.38

12

 

M77234

Homo sapiens ribosomal protein S3a

0.38

6

Ribosomal

 

Day 28EEM/Day 21E up-regulated genes (2 <)

   

AF020508

Bos taurus PAG-6

3.45

11

Cytokine family

X01912

Goat epsilon I beta-globin

3.00

9

 

AF004133

Sus scrofa adipocyte membrane protein

2.66

1

Membrane protein

M73961

Ovis aries PAG-1

2.35

6

Cytokine family

J02840

Bos taurus placental lactogen (PL-Ala)

2.21

5

Cytokine family

AF192336

Bos taurus PAG-19

2.17

11

Cytokine family

AB005148

Bos taurus interleukin 1 (IL-1) receptor antagonist

2.13

1

Cytokine family

D10989

Bos taurus endothelin ETB receptor

2.12

1

 

X59504

Bos taurus PRP-VI

2.08

11

Cytokine family

M80328

Bos taurus PL-Val

2.01

5

Cytokine family

Z11742

Bos taurus annexin XI

2.00

5

Apoptosis & Cell cycle

  1. All data of individual gene changes are available in Suppl. Table 3 of the Additional file.