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Table 4 Genes whose transcript level was up-regulated in Group A (n = 5) when compared with Group B (n = 6) and Group C (n = 6) in the microarray analyses

From: Endometrial gene expression reveals compromised progesterone signaling in women refractory to embryo implantation

UniGene ID Gene symbol Gene title A vs. B p value A vs. C p value Average
Hs.35086 USP1 Ubiquitin specific protease 1 (USP1), mRNA. 42.52 0.00022 44.32 0.00043 43.42
Hs.436977 SYTL3 Synaptotagmin-like 3 20.68 0.00043 26.72 0.00013 23.70
Hs.133421 LIFR Leukemia inhibitory factor receptor 43.71 0.00086 3.32 0.00022 23.52
Hs.160211 THRAP3 Thyroid hormone receptor associated protein 3 (THRAP3), mRNA. 29.04 0.00013 3.66 0.00043 16.35
Hs.532399 ZC3H11A KIAA0663 gene product (KIAA0663), mRNA. 4.38 0.00043 28.05 0.00086 16.21
Hs.652169 PLGLB2 Plasminogen-like B2 21.71 0.00086 9.45 0.00086 15.58
Hs.524809 CLIP1 Restin (Reed-Steinberg cell-expressed intermediate filament-associated protein) (RSN), transcript variant 2, mRNA. 2.19 0.00043 25.81 0.00043 14.00
Hs.16355 MYH10 Myosin, heavy polypeptide 10, non-muscle (MYH10), mRNA. 2.6 0.00013 24.08 0.00022 13.34
Hs.502829 SF1 Splicing factor 1 (SF1), transcript variant 4, mRNA. 21.86 0.00043 4.08 0.00086 12.97
Hs.517949 MAP4 Microtubule-associated protein 4 (MAP4), transcript variant 1, mRNA. 10.41 0.00043 11.96 0.00013 11.18
Hs.8118 SMCHD1 KIAA0650 protein 18.77 0.00013 2.17 0.00043 10.47
Hs.514806 GALNT1 UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 1 (GalNAc-T1) (GALNT1), mRNA. 11 0.00043 9.38 0.00043 10.19
Hs.130293 LUC7L3 Cisplatin resistance-associated overexpressed protein (CROP), transcript variant 2, mRNA. 6.32 0.00043 11.88 0.00022 9.10
Hs.143728 WASL Wiskott-Aldrich syndrome-like (WASL), mRNA. 2.07 0.00022 14.32 0.00086 8.20
Hs.532082 IL6ST Interleukin 6 signal transducer (gp130, oncostatin M receptor) (IL6ST), transcript variant 2, mRNA. 2.95 0.00013 13 0.00043 7.97
Hs.2913 EPHB3 EphB3 = HEK2 = tyrosine kinase receptor = large erk kinase 11.39 0.00086 4.41 0.00086 7.90
Hs.431081 USP53 Ubiquitin specific protease 53 2.23 0.00013 13.55 0.00043 7.89
Hs.194726 BAG4 BCL2-associated athanogene 4 (BAG4), mRNA. 11.71 0.00013 3.16 0.00086 7.44
Hs.464971 PIK3C3 Phosphoinositide-3-kinase, class 3 3.92 0.00043 10.41 0.00086 7.16
Hs.9997 SECISBP2L KIAA0256 gene product (KIAA0256), mRNA. 5.43 0.00086 7.36 0.00013 6.39
Hs.497788 EPRS Glutamyl-prolyl-tRNA synthetase (EPRS), mRNA. 4.41 0.00043 8.11 0.00043 6.26
Hs.101014 CEP57 Translokin (KIAA0092), mRNA. 5.03 0.00086 7.31 0.00086 6.17
Hs.143600 GOLIM4 Golgi phosphoprotein 4 (GOLPH4), mRNA. 2.46 0.00043 9.85 0.00022 6.16
Hs.24485 SMC3 Chondroitin sulfate proteoglycan 6 (bamacan) (CSPG6), mRNA. 2.53 0.00022 9.65 0.00043 6.09
Hs.193832 GPATCH4 G patch domain containing 4 (GPATC4), transcript variant 3, mRNA. 3.32 0.00013 7.94 0.00086 5.63
Hs.406695 PRDM7 PR domain containing 7 (PRDM7), mRNA. 2.04 0.00086 8.46 0.00086 5.25
Hs.42194 SPCS3 Signal peptidase complex subunit 3 homolog (S. cerevisiae) (SPCS3), mRNA. 2.1 0.00043 8.34 0.00022 5.22
Hs.458418 KIAA1731 PREDICTED: KIAA1731 protein (KIAA1731), mRNA. 2.04 0.00013 8.4 0.00086 5.22
Hs.49853 CCAR1 Cell division cycle and apoptosis regulator 1 2.75 0.00086 7.67 0.00013 5.21
Hs.496414 ATP7A ATPase, Cu++ transporting, alpha polypeptide (Menkes syndrome) 2.89 0.00086 7.16 0.00043 5.02
Hs.481181 NEK1 NIMA (never in mitosis gene a)-related kinase 1 (NEK1), mRNA. 3.07 0.00086 5.35 0.00043 4.21
Hs.440833 PKN2 protein kinase N2 (PKN2), mRNA. 6.02 0.00022 2.14 0.00043 4.08
Hs.524009 AASDHPPT Aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase 3.89 0.00013 4.2 0.00086 4.04
Hs.26904 SEC63 SEC63 homolog (S. cerevisiae) 2.95 0.00086 3.78 0.00043 3.37
Hs.93485 SCN2A MRNA; cDNA DKFZp761D191 (from clone DKFZp761D191) 2.08 0.00043 4.5 0.00013 3.29
Hs.31082 TMEM33 Transmembrane protein 33 2.19 0.00086 4.35 0.00043 3.27
Hs.371372 CWC27 Serologically defined colon cancer antigen 10 (SDCCAG10), mRNA. 2.95 0.00043 3.51 0.00086 3.23
Hs.523299 EIF3A Eukaryotic translation initiation factor 3, subunit 10 theta, 150/170 kDa (EIF3S10), mRNA. 2.68 0.00022 3.58 0.00022 3.13
Hs.440320 CUL5 Cullin 5 (CUL5), mRNA. 2.6 0.00043 3.25 0.00043 2.93
Hs.203965 PHTF2 Putative homeodomain transcription factor 2 3.56 0.00013 2.3 0.00086 2.93
Hs.335068 TGS1 Nuclear receptor coactivator 6 interacting protein (NCOA6IP), mRNA. 3.63 0.00086 2.16 0.00013 2.89
Hs.189075 TWF1 Twinfilin, actin-binding protein, homolog 1 (Drosophila) 2.36 0.00086 2.97 0.00043 2.67
Hs.127310 UHMK1 U2AF homology motif (UHM) kinase 1 (UHMK1), mRNA. 2.85 0.00086 2.46 0.00043 2.66
Hs.430849 OSBPL8 Oxysterol binding protein-like 8 (OSBPL8), transcript variant 1, mRNA. 2.03 0.00022 3.05 0.00022 2.54
Hs.150557 KLF9 Basic transcription element binding protein 1 (BTEB1), mRNA. 2.6 0.00086 2.39 0.00043 2.50
Hs.210850 HECTD1 HECT domain containing 1 (HECTD1), mRNA. 2.35 0.00013 2.6 0.00086 2.47
Hs.142442 HP1BP3 Heterochromatin protein 1, binding protein 3 2.08 0.00086 2.41 0.00013 2.25
Hs.369284 ESF1 Chromosome 20 open reading frame 6 (C20orf6), mRNA. 2.13 0.00013 2.3 0.00086 2.21
Hs.119023 SMC2 SMC2 structural maintenance of chromosomes 2-like 1 (yeast) (SMC2L1), mRNA. 2.25 0.00022 2 0.00022 2.13
Hs.481927 NIPBL Nipped-B homolog (Drosophila) 2.11 0.00043 2.04 0.00086 2.08
Hs.374201 KIF21A kinesin family member 21A (KIF21A), mRNA. 2.13 0.00013 2 0.00013 2.06
  1. Data includes genes with increased transcript levels displaying a ≥2-fold difference in average A vs. B and A vs. C.