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Table 2 Summary of top scored features retrieved from reports of enrichment analysis from input list of cytokines, chemokines and growth factors showing high basal secretion and/or differential secretion following administration of hCG

From: Profiles of cytokines secreted by isolated human endometrial cells under the influence of chorionic gonadotropin during the window of embryo implantation

Enrichment by

Types of cell culture

Epithelial cells

Stromal cells

Mixed cells

(Active products)

(Active products)

(Active products)

[pValue; FDR]

[pValue; FDR]

[pValue; FDR]

Pathway maps

Immune response

Immune response

Immune response

(CCL2, CCL4, CCL5, CCL7, XCL1, IL-6, IL-12, HGF)

(CCL4, GMCSF, IFNG, IL-1b, IL-6, IL-17, MIF, VEGF)

(CCL3, CCL4, CCL5, GCSF, GMCSF, HGF, IFNG, IL-1b, IL-6, MIF, TNF, VEGF)

[8.3E-08; 1.6E-05]

[8.7E-08; 8.5E-06]

[1.9E-09; 4.3E-07]

Macropinocytotic transport

 

Epithelial-mesenchymal transition

(HGF, MCSF)

 

(FGF2, HGF, IL-1b, TNF)

[1.2E-05; 5.7E-04]

 

[7.9E-05; 1.7E-05]

GO process

Chemotaxis, leukocyte chemotaxis

Chemotaxis, leukocyte chemotaxis

Regulation of response to stimulus, signal transduction and cell communication

(CCL2, CCL3, CCL4, CCL5, CCL7, CXCL1, CXCL12, HGF, IL-6, MIF)

(CCL4, IFNG, IL-1b, IL-6, IFNG, MIF, VEGF)

(CCL4, CCL5, CXCL12, FGF2, GCSF, GMCSF, HGF, IL-13, LIF, MCSF, MIF, TNF, VEGF)

[9.9E-21; 7.9E-18]

[2.0E-15; 3.2E-12]

[1.8E-27; 3.7E-24]

 

Regulation of response to stimulus

Chemotaxis, leukocyte chemotaxis

 

(CCL4, FGF2, IL-1b, IL-6, IL-17 VEGF)

(CCL3, CCL4, CCL5, CXCL12, FGF2, HGF, IFNG, IL-1b, IL-6, MIF)

 

[8.4E-14; 4.6E-11]

[5.2E-22; 2.8E-19]

  

Immune response

  

(CCL3, CCL4, CCL5, CXCL9, CXCL10, GCSF, MCSF, IFNG, IL-1b, IL-6, IL-13, LIF, MCSF, MIF, TNF, VEGF)

  

[4.0E-21; 1.2E-18]

Process networks

Inflammation

Immune response

Inflammation

(CCL2, CCL3, CCL4, CCL5, CCL7, CXCL12, HGF, IL-6, IL-12, LIF, MCSF)

(GMCSF, IL-1b, IL-6, IL-17, MIF)

(CCL3, CCL5, GCSF, GMCSF, IFNG, IL-6, IL-13, LIF, MCSF, TNF)

[2.9E-09; 2.4E-07]

[4.9E-09; 3.2E-07]

[9.6E-13; 9.3E-11]

Chemotaxis

Signal transduction

 

(CCL2, CCL3, CCL4, CCL5, CCL7, CXCL1, CXCL12)

(GMCSF, IFNG, IL-1b, VEGF)

 

[5.7E-09; 2.4E-07]

[9.9E-06; 3.1E-04]

 

Chemotaxis

Signal transduction

Proliferation

(CCL2, CCL3, CCL4, CCL5, CCL7, CXCL1, CXCL12)

(GMCSF, IFNG, IL-1b, VEGF)

(CXCL12, FGF2, GCSF, GMCSF, HGF, LIF, VEGF)

[5.7E-09; 2.4E-07]

[9.9E-06; 3.1E-04]

[6.6E-12; 3.2E-10]

Immune response

Inflammation

Cell adhesion

(CXCL12, CCL2, CXCL1, IL-6, CCL7, MIF)

(IL-1b, GMCSF, IFNG, CCL4, IL-6)

(IL-1b, TNF, CCL3, VEGF, MIF, FGF2, CCL5, CCL4, CXCL12)

[1.5E-08; 2.4E-07]

[1.5E-06; 3.1E-04]

[3.3E-10; 1.1E-08]

Cell adhesion

Anti-apoptosis

Chemotaxis

(CCL2, CCL3, CCL4, CCL5, CCL7, CXCL1, CXCL12)

(FGF2, GMCSF, IL-1b, IL-6, VEGF)

(CCL3, CCL4, CCL5, CXC12, FGF2, IL-1b, MIF, VEGF)

[1.4E-08; 2.9E-06]

[2.3E-05; 3.7E-04]

[9.4E-10; 2.3E-08]

Proliferation

Cell adhesion

Anti-apoptosis

(CCL4, CCL5, CXCL12, HGF, IL-12)

(FGF2, IL-1b, IL-6, VEGF)

(CCL3, FGF2, GMCSF, HGF, IL-1b, IL-6, TNF, VEGF)

[2.4E-07; 4.1E-06]

[1.4E-04; 1.0E-03]

[5.8E-09; 9.4E-08]

  

Immune response

  

(GCSF, GMCSF, IL-1b, IL-6, MIF)

  

[5.2E-08; 6.3E-07]

  1. FDR false discovery rate.